- IMAGEJ SOFTWARE TUTORIAL HOW TO
- IMAGEJ SOFTWARE TUTORIAL UPDATE
- IMAGEJ SOFTWARE TUTORIAL FULL
- IMAGEJ SOFTWARE TUTORIAL REGISTRATION
The BigStitcher is integrated with the BigDataViewer and thus shares the same data representation, which is stored as a XML file on disk. Since image data is produced in a variety of formats, the first step is to assemble all images into a dataset and load the necessary metadata or manually define it if it is missing.
IMAGEJ SOFTWARE TUTORIAL FULL
The workflow of the BigStitcher consists of multiple steps covering import, visualisation, processing, and output that are explained in full detail under the respective pages linked below: Opening / Importing an Image Dataset The source code is available on GitHub, please also report feature requests & bugs there. After applying the changes and restarting Fiji, BigStitcher will be available under Plugins › BigStitcher › BigStitcher.
IMAGEJ SOFTWARE TUTORIAL UPDATE
Just go to Help › Update…, click Manage update sites and select BigStitcher in the list. DownloadĪ beta-Version of BigStitcher is available via the Fiji Updater. Each tile of size 1920x1920x1000 pixels is depicted in a random color. Illustrates an example of an interactive view of a single-view multi-tile dataset with irregular tiling acquired by lightsheet microscopy.
IMAGEJ SOFTWARE TUTORIAL REGISTRATION
The BigStitcher is fully integrated with the BigDataViewer and is thus able to interactively display and process the input images independent of their size. The software supports images of almost arbitrary size ranging from very small images up to volumes in the range of many terabytes, which are for example produced when acquiring cleared tissue samples with lightsheet microscopy.Īs its predecessor, the Image Stitching, the BigStitcher can run in fully automatically mode but is additionally able to guide the user through the alignment process by interactively showing intermediate results with the option for user interaction, which includes interactive setup of approximate tile locations. The BigStitcher is a software package that allows simple and efficient alignment of multi-tile and multi-angle image datasets, for example acquired by lightsheet, widefield or confocal microscopes.
IMAGEJ SOFTWARE TUTORIAL HOW TO
If you’d like to help, check out the how to help guide! Introduction & Overview
The content of this page has not been vetted since shifting away from MediaWiki.